Biodiversity and Biological Collections Software
Biodiversity and Biological Collections
BioLink
BIOTA: The Biodiversity Database Manager
Bio-Tools.Net TAXIS 3.5
DeltaAccess
DELTA/Intkey
Digital Taxonomy: A Web Resource for Open Source Biodiversity Informatics
Freezerworks, Dataworks Development, Inc.
Iowa State Entomology Index of Internet Resources
LucID 3
Mantis
New Moon
Papyrus
Platypus
Specify: Biodiversity Collections Management
UCMP (Museum of Paleontology, University of California, Berkeley) Phylogenetics Databases and Information

Morphology and Imaging Hardware and Software
Auto-montage
CombineZ5
Digital Morphology
Digital Taxonomy: A Web Resource for Open Source Biodiversity Informatics
HeliconFocus
Integrated Morphometrics Package (IMP)
Visionary Digital
Morphometrics at SUNY Stony Brook
Syncroscopy
Zarbeco

Phylogenetics Software
Digital Taxonomy: A Web Resource for Open Source Biodiversity Informatics
Evolutionary Biology Group, Department of Zoology, University of Oxford
Felsenstein’s list of Phylogeny Programs
Kolokotronis' list of Evolutionary Genetics Programs
Goloboff's programs for cladistics and biogeography
Indiana University archive of Molecular Biology Software (IUBio): link 1, link 2, link 3
Rod Page’s software programs and list
POY (Phylogeny Reconstruction via Optimization of DNA and other Data)
Winclada/Nona/TNT
UCMP (Museum of Paleontology, University of California, Berkeley) Phylogenetics Software Resources